pydeseq2.preprocessing
Functions
|
Return normalized counts and size_factors. |
- deseq2_norm(counts)
Return normalized counts and size_factors.
Uses the median of ratios method.
- Parameters
counts (
pandas.DataFrame
orndarray
) – Raw counts. One column per gene, one row per sample.- Return type
- Returns
deseq2_counts (
pandas.DataFrame
orndarray
) – DESeq2 normalized counts. One column per gene, rows are indexed by sample barcodes.size_factors (
pandas.DataFrame
orndarray
) – DESeq2 normalization factors.