PyDESeq2

DeseqDataSet(*[, adata, counts, metadata, ...])	A class to implement dispersion and log fold-change (LFC) estimation.
DeseqStats(dds[, contrast, alpha, ...])	PyDESeq2 statistical tests for differential expression.
Inference()	Abstract class with DESeq2-related inference methods.
DefaultInference([joblib_verbosity, ...])	Default DESeq2-related inference methods, using scipy/sklearn/numpy.
utils
grid_search
preprocessing